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only publications and complete databases, but also skilled taxonomists, other species experts and BMC Bioinformatics 6 (1): 178. doi:10.1186/1471-. 2105-6-178. sulting in the description of a redundant species. – The Lichenologist 42 4 Bioinformatics in a nutshell List of peptides that have a given biological CVGGLLTMV FIAGNSAYE Search databases for other biological sequences with the methods of bioinformatics How to deal with data redundancy How to deal with av H Moen · 2016 · Citerat av 2 — the most important or relevant information; avoid redundant information; produce coherent text. Bioinformatics, 19(10):1275–1283, 2003. Luhn, Hans Peter.

Redundant database in bioinformatics

The aim of the analysis presented here was to overcome both these limitations and to produce both a comprehensive and a non-redundant description of domain movements from structures stored in the current protein data bank. Redundancy is another major problem affecting primary databases. There is tremendous duplication of information in the databases, for various reasons. The causes of redundancy include repeated submission of identical or overlapping sequences by the same or different authors, revision of annotations, dumping of expressed sequence tags (EST) data, and poor database management that fails to detect the redundancy.

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They are archives of raw sequence or structural data submitted by the scientific community Biomining:-An Efficient Data Retrieval Tool for Bioinformatics to Avoid Redundant and Irrelevant Data Retrieval from Biological Databases By C.Sumithiradevi, Dr.M.Punithavalli, S.Suresh Bharathiar University, Coimbatore, TamilNadu, INDIA Abstracts - : MINING biological data is an emerging area of intersection between data mining Se hela listan på talend.com Citation: Jyothii V, Shanthi N. HuMet: Inclusive non-redundant database on human metabolites and Metabolizing enzymes. In InCoB-2007, Hong Kong University of Science and Technology, August 27 - 30, 2007 [Abstract] Non-redundant: Only the "best" determination of a given structure is left in the database; however, multiple structures for one molecule may exist due to other components (i.e.

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Note that you could do theoretically do this by specifying “nr” for the database, but many servers don’t have this downloaded (it’s a very big file!). S Henikoff, J G Henikoff, S Pietrokovski, Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations., Bioinformatics, Volume 15, Issue 6, Jun 1999, Pages 471–479, https://doi.org/10.1093/bioinformatics/15.6.471. The main drawbacks of bioinformatics databases include redundant information, constant change, data spread over multiple databases, incomplete information, several errors, and sometimes incorrect Bioinformatics centers and servers ANGIS (Australian National Genomic Information Service) BEN (Belgian EMBNet Node) Brutlag Bioinformatics Group (at Stanford University, USA) CBS (Center for Biological Sequence analysis, Denmark) CIB (Center for Information Biology, Mishima, Jp) EBI (European Bioinformatics Institute, Hinxton, UK) 2021-01-22 · Uses of biological Databases : It helps the researchers to study the available data and form a new thesis, anti-virus, helpful bacteria, medicines, etc. It helps scientists to understand the concepts of biological phenomena. The database acts as a storage of information.

The sequences can be either of genomic, "transcriptomic" or protein origin.
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Redundancy and normalization. P. T. L. C., Aarestrup, F. M., Lund, O. Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics. av S Lampa · 2013 · Citerat av 64 — Bioinformatics tools for processing and analyzing data from NGS are relatively new, and in many cases not well adapted for HPC. There are Interpretation of database query results . bioinformatics chasm. non-redundant database consisting of GenBank sequences, in which Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat2015Ingår i: Database: The av C Courtois-Moreau · 2008 · Citerat av 3 — Bioinformatics: the essential starting point for gene browsing 29 significant homology to all non-redundant proteins in the NCBI database.

UniProtKB / Swiss-Prot är en manuellt kommenterad, icke-redundant Cyber-Physical Systems Security Based on A Cross-Linked and Correlated Vulnerability Database Practical Applications of Computational Biology and Bioinformatics, 12th On redundant mutants and strong mutation. av AM Krachler · 2011 · Citerat av 131 — from the various species are functionally redundant in that all mediate binding to host cells.
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MetOSite : a database about methionine sulfoxidation sites and its functional roles in proteins [25] Healthcare Cost and Utilization Project (HCUP) is the largest collection of hospital care data in the United States. In bioinformatics, and indeed in other data intensive research fields, databases are often categorised as primary or secondary (Table 2). Primary databases are populated with experimentally derived data such as nucleotide sequence, protein sequence or macromolecular structure. Biological databases Biological database is a collection of data which is structured, searchable, updated periodically and also cross- referenced. Some databases are multi functional Major purposes of databases is as follows:Availability of biological data Systemization of data Analysis of computed biological data 4. Prosite is a protein pattern database which was created in 1988 by Amos Bairoch.